About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12689564_12691523_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12689564 - 12691523
Intron Length:
1960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAG
U12 Branch Point Sequence:
TGTTTCCCCACA
Flanking Amino Acid:
GCLPCNCNPVGSLSTQCDSY
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
60.4
0.26
1.6
69.7
44.2
Major PPT
79.4
0.66
0.8
73.3
31.8
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
45.8
-0.3
2.2
64.86
41.3

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580