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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12691642_12691754_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12691642 - 12691754
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATGAATT
Flanking Amino Acid:
GFHSLSEAGCRPCSCNSAGS
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.6
0.73
0.8
81
31
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
63.9
0.51
1.7
82.16
39.2

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580