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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12693014_12693102_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12693014 - 12693102
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGTCAT
5'SS Class:
major
3'SS Sequence:
CTTCCCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TGTCCCCTGACT
Flanking Amino Acid:
SYFPMYFVAPRKFLGNQVLS
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.4
68.8
43.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
81
0.7
0.8
77.7
29.4
Minor 5ss
35.9
-1.6
3.3
48.4
41.2
Minor BPS
65
0.55
1.7
83.12
37.2

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580