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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12693670_12694960_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12693670 - 12694960
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGCTGATGAAGT
Flanking Amino Acid:
IKIRGTYSERSAGHLDDVTI
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
71.2
34.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
73.2
0.52
0.9
64.1
41.5
Minor 5ss
30.8
-2.2
2.9
35.8
34.5
Minor BPS
43
-0.4
2.3
62.65
46.8

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580