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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12698598_12698725_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12698598 - 12698725
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
CATGCTGTAGCT
Flanking Amino Acid:
PACYRLVKDKVAEQRERLQE
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
73.4
0.53
0.9
68.1
32
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
45.1
-0.2
2.3
64.27
46.4

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580