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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12700276_12700686_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12700276 - 12700686
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAA
U12 Branch Point Sequence:
AGAGCTTCAAGG
Flanking Amino Acid:
EKAKMAADNVSITPPESTGD
Intron Amino Acid Position:
1128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
60.4
0.26
1.3
65.6
41.4
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
43.5
-0.6
1.9
43.4
42.1

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580