About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12700767_12701129_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12700767 - 12701129
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCTGT
5'SS Class:
weak_major
3'SS Sequence:
TAATCTTGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TCTTCTGTAATC
Flanking Amino Acid:
LAEEARKLAERHKQEADEIV
Intron Amino Acid Position:
1154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
60.6
46.7
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
73.6
0.53
1
65.8
44.8
Minor 5ss
49.7
-0
3
73.6
43
Minor BPS
61.4
0.34
2
73.34
38.7

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580