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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12701268_12701481_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12701268 - 12701481
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTAATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAATT
Flanking Amino Acid:
TANDIDELNQKYNQARNISR
Intron Amino Acid Position:
1200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.7
39.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.5
0.69
0.9
83.1
32.3
Minor 5ss
29.8
-2.3
2.8
32.5
35.8
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580