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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12703729_12704208_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12703729 - 12704208
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCGCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AGTTTATTATGC
Flanking Amino Acid:
ADQDMMMAGMASRAAQEAEE
Intron Amino Acid Position:
1457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.6
0.69
0.8
74
31.1
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
45.7
-0.3
2
58.24
40.5

Associated Gene:

Gene:
LAMC1
Ensembl Gene ID:
ENSAPLG00000003279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003443
12646723 - 12707302
60580