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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12715282_12716024_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12715282 - 12716024
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CTCCTCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
AGCTCCTCCATC
Flanking Amino Acid:
CCLPCRCHPQGSLSPQCNSD
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
57.2
41.7
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
74.2
0.54
0.9
65.7
35
Minor 5ss
28.1
-2.5
3.6
32.1
42.7
Minor BPS
48
-0.1
2
57.6
41.5

Associated Gene:

Gene:
LAMC2
Ensembl Gene ID:
ENSAPLG00000002568
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002593
12712066 - 12728229
16164