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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12716555_12716792_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12716555 - 12716792
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
ACCACGTGAGCA
Flanking Amino Acid:
KAGTAGERCDRCKPNFYNLD
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.9
33.8
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
26.1
-2.7
3.2
33.4
42.6
Minor BPS
40.1
-0.7
2.2
47.18
42.6

Associated Gene:

Gene:
LAMC2
Ensembl Gene ID:
ENSAPLG00000002568
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002593
12712066 - 12728229
16164