About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12716930_12717206_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12716930 - 12717206
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGTGCTTGCCCT
Flanking Amino Acid:
VHRITSSFQQGAEGWTGVRE
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
73.1
0.52
0.9
62.4
39.8
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
36.1
-0.9
3.5
64.89
45.7

Associated Gene:

Gene:
LAMC2
Ensembl Gene ID:
ENSAPLG00000002568
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002593
12712066 - 12728229
16164