About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12717330_12717600_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12717330 - 12717600
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCACG
5'SS Class:
major
3'SS Sequence:
CTTCCATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CCTGCTTCCATT
Flanking Amino Acid:
TWEPLYFVAPAKFLGNQQLS
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
60.7
43.7
Major BPS
65
0.37
1.3
76.1
38
Major PPT
82.9
0.74
0.8
76.9
30.4
Minor 5ss
45.9
-0.4
2.5
55.2
43.3
Minor BPS
44.3
-0.3
2
58.73
45.6

Associated Gene:

Gene:
LAMC2
Ensembl Gene ID:
ENSAPLG00000002568
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002593
12712066 - 12728229
16164