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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12717791_12718094_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12717791 - 12718094
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGGG
5'SS Class:
major
3'SS Sequence:
GTCTCATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGGTCTTCAACA
Flanking Amino Acid:
PCGVSQTYTFRLDEHPSSNW
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
57.2
42
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
66.9
0.38
1
60.8
39.3
Minor 5ss
22.5
-3.2
3.3
28.7
43.7
Minor BPS
66
0.5
1.5
72.36
39.7

Associated Gene:

Gene:
LAMC2
Ensembl Gene ID:
ENSAPLG00000002568
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002593
12712066 - 12728229
16164