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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12718730_12718837_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12718730 - 12718837
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
CGTCCCATACCC
Flanking Amino Acid:
QGGGICDPDTGECYSGDENV
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
47.7
-0.1
1
51
32
Major PPT
75.2
0.57
0.7
73.7
24.6
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
48.7
-0.1
1.9
61.83
43.2

Associated Gene:

Gene:
LAMC2
Ensembl Gene ID:
ENSAPLG00000002568
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002593
12712066 - 12728229
16164