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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12723816_12724334_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12723816 - 12724334
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
CGGTCTGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
ATATCCTTCACC
Flanking Amino Acid:
LLQRGEGERAMLTQLLSRAN
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
58
41.2
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
67
0.38
1
60
40.5
Minor 5ss
33.2
-1.9
3.4
47.4
42.4
Minor BPS
70.7
0.63
1.7
77.87
37.6

Associated Gene:

Gene:
LAMC2
Ensembl Gene ID:
ENSAPLG00000002568
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002593
12712066 - 12728229
16164