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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12725816_12725903_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12725816 - 12725903
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TTGCATTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAG
U12 Branch Point Sequence:
CTTTGCTTTACA
Flanking Amino Acid:
VEADTAMIQETAQEAQSVHY
Intron Amino Acid Position:
1058

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
58.8
0.22
1.6
75
40
Major PPT
80.2
0.68
0.9
77.5
36.5
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
60.2
0.32
2.1
75.18
42.3

Associated Gene:

Gene:
LAMC2
Ensembl Gene ID:
ENSAPLG00000002568
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002593
12712066 - 12728229
16164