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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12731399_12731549_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12731399 - 12731549
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCCACTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTTCTCCCACT
Flanking Amino Acid:
PMSVISSTKSRLALQHGDGH
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
66.8
0.38
0.8
57.2
33.3
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
47
-0.1
2.2
72.5
44.6

Associated Gene:

Gene:
NMNAT2
Ensembl Gene ID:
ENSAPLG00000001034
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001122
12731296 - 12749893
18598