About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12731618_12732326_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12731618 - 12732326
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGCCAT
U12 Branch Point Sequence:
CCTCCCTCCACA
Flanking Amino Acid:
NHSSILRKYKSNILVVKDDS
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
45.3
-0.2
1.4
49.9
45.3
Major PPT
74.3
0.55
0.7
67.8
25.7
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
48.7
-0.1
2
60.78
45.1

Associated Gene:

Gene:
NMNAT2
Ensembl Gene ID:
ENSAPLG00000001034
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001122
12731296 - 12749893
18598