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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12734093_12734572_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12734093 - 12734572
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTGCCCCACCT
Flanking Amino Acid:
LGTVMRYEEIELRILLLCGS
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
86.7
0.82
0.6
84.9
22.8
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
48.1
-0
2.2
76.94
45.3

Associated Gene:

Gene:
NMNAT2
Ensembl Gene ID:
ENSAPLG00000001034
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001122
12731296 - 12749893
18598