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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12735559_12736210_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12735559 - 12736210
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTCAATTAAAC
Flanking Amino Acid:
VLEHHRDLMKRVTGCILSNV
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81.5
0.71
0.8
76.5
32.1
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
54.7
0.13
1.9
72.18
37.6

Associated Gene:

Gene:
NMNAT2
Ensembl Gene ID:
ENSAPLG00000001034
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001122
12731296 - 12749893
18598