About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12753630_12767092_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12753630 - 12767092
Intron Length:
13463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTATTTCTAATT
Flanking Amino Acid:
MSLLCAQYLRQAEVLKADM
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.5
0.8
0.8
79.8
32.3
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
56.4
0.28
1.6
72.5
39.1

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038380
12753158 - 12799314
46157
ENSAPLT00000037797
12753158 - 12799314
46157
ENSAPLT00000027973
12753158 - 12801493
48336
ENSAPLT00000016529
12753158 - 12799314
46157