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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12767125_12768326_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12767125 - 12768326
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
GTTACAAAAACC
Flanking Amino Acid:
QAEVLKADMTDSKLGPAEVW
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
81.6
30.3
Major BPS
60.3
0.26
1
65.5
28
Major PPT
83.2
0.75
0.8
84.8
30
Minor 5ss
37.3
-1.4
3.3
52.6
44.6
Minor BPS
45.4
-0.3
2.1
62.58
42

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027973
12753158 - 12801493
48336
ENSAPLT00000016529
12753158 - 12799314
46157
ENSAPLT00000038380
12753158 - 12799314
46157
ENSAPLT00000037797
12753158 - 12799314
46157