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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12773915_12774266_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12773915 - 12774266
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGAATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATG
Flanking Amino Acid:
LQKALSKALESRDEVKTRWS
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72
0.5
1
67.4
38.1
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
67
0.4
1.4
70.32
37

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038380
12753158 - 12799314
46157
ENSAPLT00000037797
12753158 - 12799314
46157
ENSAPLT00000027973
12753158 - 12801493
48336
ENSAPLT00000016529
12753158 - 12799314
46157