Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12774403_12776455_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12774403 - 12776455

Intron Length:

2053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

GTCTTTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TGCTCTGTATGT

Flanking Amino Acid:

LREKLEEQFKRLLFQKAFNS

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

1.1

82.6

30.6

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

81.6

0.71

0.9

76.2

37.8

Minor 5ss

39.2

-1.2

2.7

51.6

44.8

Minor BPS

43.5

-0.4

2.4

63.63

Associated Gene:

Gene:

SMG7

Ensembl Gene ID:

ENSAPLG00000015811

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037797

12753158 - 12799314

46157

ENSAPLT00000027973

12753158 - 12801493

48336

ENSAPLT00000016529

12753158 - 12799314

46157

ENSAPLT00000038380

12753158 - 12799314

46157