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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12776619_12777643_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12776619 - 12777643
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GCTCTGTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTGCACTGATTT
Flanking Amino Acid:
LCWTQLLALFMSFLGVLCKC
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
78
0.63
0.9
68.5
42.1
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
44.4
-0.3
1.8
59.2
44.1

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016529
12753158 - 12799314
46157
ENSAPLT00000038380
12753158 - 12799314
46157
ENSAPLT00000037797
12753158 - 12799314
46157
ENSAPLT00000027973
12753158 - 12801493
48336