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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12777801_12780819_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12777801 - 12780819
Intron Length:
3019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTGATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCACTTAGTT
Flanking Amino Acid:
FQEAVVDERRYIWPWLISLL
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
0.9
76.8
31.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.4
0.75
0.9
77.7
35.3
Minor 5ss
35
-1.7
3.4
50.7
41.2
Minor BPS
62.5
0.47
1.8
82.84
38.1

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038380
12753158 - 12799314
46157
ENSAPLT00000037797
12753158 - 12799314
46157
ENSAPLT00000027973
12753158 - 12801493
48336
ENSAPLT00000016529
12753158 - 12799314
46157