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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12784949_12785310_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12784949 - 12785310
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGCTTTTCAATT
Flanking Amino Acid:
TGKWIADNQPRLIQCENEVG
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.6
0.8
0.7
85.1
29.7
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
58.7
0.35
1.5
71.95
39.8

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027973
12753158 - 12801493
48336
ENSAPLT00000016529
12753158 - 12799314
46157
ENSAPLT00000038380
12753158 - 12799314
46157
ENSAPLT00000037797
12753158 - 12799314
46157