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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12789632_12790827_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12789632 - 12790827
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTTAC
U12 Branch Point Sequence:
TGCTGGGAAACT
Flanking Amino Acid:
GAFPPLPSRPGFPPPTYVVP
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
51.3
0.03
1.2
44.7
38.3
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
36.4
-0.9
2.8
59.57
49.6

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037797
12753158 - 12799314
46157
ENSAPLT00000027973
12753158 - 12801493
48336
ENSAPLT00000016529
12753158 - 12799314
46157
ENSAPLT00000038380
12753158 - 12799314
46157