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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12792321_12793859_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12792321 - 12793859
Intron Length:
1539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
ATTTCTGTCACT
Flanking Amino Acid:
QDAVSRMTFEDPKSSPLLPP
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.3
34.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
73
0.52
0.9
67.3
39.1
Minor 5ss
36.2
-1.6
3.4
51.2
45.7
Minor BPS
53.7
0.2
2.4
81.74
40.3

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037797
12753158 - 12799314
46157
ENSAPLT00000016529
12753158 - 12799314
46157
ENSAPLT00000038380
12753158 - 12799314
46157