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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12792321_12796159_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12792321 - 12796159
Intron Length:
3839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
GTTTTTTCAAAG
Flanking Amino Acid:
QDAVSRMTFEKSLLEKPSEL
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.3
34.3
Major BPS
62
0.3
1
53
34.1
Major PPT
76.3
0.59
1
78.1
34.2
Minor 5ss
36.2
-1.6
3.4
51.2
45.7
Minor BPS
53.3
-0
1.7
61.27
40.6

Associated Gene:

Gene:
SMG7
Ensembl Gene ID:
ENSAPLG00000015811
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027973
12753158 - 12801493
48336