Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12798689_12799200_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12798689 - 12799200

Intron Length:

512

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATAGTTA

5'SS Class:

major

3'SS Sequence:

TGTTTGCTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

CTAGTGTTGACT

Flanking Amino Acid:

SSAVLMESLKSIWSSSMMHP

Intron Amino Acid Position:

1155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

70.8

35.5

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

80.2

0.68

0.8

77.9

36.6

Minor 5ss

45.8

-0.4

3.2

63.9

47.7

Minor BPS

47.7

-0.1

2.2

66.6

44.7

Associated Gene:

Gene:

SMG7

Ensembl Gene ID:

ENSAPLG00000015811

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027973

12753158 - 12801493

48336

ENSAPLT00000016529

12753158 - 12799314

46157

ENSAPLT00000038380

12753158 - 12799314

46157

ENSAPLT00000037797

12753158 - 12799314

46157