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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12802863_12804740_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12802863 - 12804740
Intron Length:
1878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CAAATTTTATCT
Flanking Amino Acid:
AGDVILVLSKVNEDWLEGQC
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.4
0.89
0.7
81.5
35.9
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
49.1
0.01
1.6
61.98
42.1

Associated Gene:

Gene:
NCF2
Ensembl Gene ID:
ENSAPLG00000015000
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015685
12802765 - 12812210
9446