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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12808242_12809682_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12808242 - 12809682
Intron Length:
1441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAC
U12 Branch Point Sequence:
TTTTTGTTCACA
Flanking Amino Acid:
FSGFAPLQPQASGPPPRPKT
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.3
Major BPS
56.4
0.16
1
52.6
34.2
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
34.7
-1.7
3.5
50.1
46.5
Minor BPS
55.5
0.17
2.4
78.35
38.8

Associated Gene:

Gene:
NCF2
Ensembl Gene ID:
ENSAPLG00000015000
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015685
12802765 - 12812210
9446