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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12809743_12810400_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12809743 - 12810400
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAG
U12 Branch Point Sequence:
TTTAAGTCACCA
Flanking Amino Acid:
EKKDYLGKAMVVASVVDKDD
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
57.9
0.2
1.7
69.7
44.2
Major PPT
71.1
0.48
0.9
65.3
36.2
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
41.4
-0.6
2.5
61.43
44.2

Associated Gene:

Gene:
NCF2
Ensembl Gene ID:
ENSAPLG00000015000
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015685
12802765 - 12812210
9446