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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12811333_12811599_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12811333 - 12811599
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CTCTCCTTCACA
Flanking Amino Acid:
QRGTIFYRRQNHEMAVKDFK
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.2
35.1
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
80.6
0.69
0.7
75.1
27
Minor 5ss
33.8
-1.8
3.2
40.4
40
Minor BPS
68
0.56
1.8
74.7
43.3

Associated Gene:

Gene:
NCF2
Ensembl Gene ID:
ENSAPLG00000015000
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015685
12802765 - 12812210
9446