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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12811683_12812036_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12811683 - 12812036
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTTCCTTAAAGA
Flanking Amino Acid:
VLGKLAEAEEAFTQSISCDK
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
81.6
0.71
0.8
75.6
32.8
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
55.9
0.18
2
72.26
40.2

Associated Gene:

Gene:
NCF2
Ensembl Gene ID:
ENSAPLG00000015000
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015685
12802765 - 12812210
9446