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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12817211_12817737_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12817211 - 12817737
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
TGACCCAGAACT
Flanking Amino Acid:
SAVLLQWHEKALAAGGVGSI
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
33.9
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
89.1
0.88
0.6
88.3
21.3
Minor 5ss
30.7
-2.2
3.4
43
44.6
Minor BPS
54.1
0.21
1.8
74.09
41.4

Associated Gene:

Gene:
ARPC5
Ensembl Gene ID:
ENSAPLG00000018503
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032040
12817148 - 12819992
2845