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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12817915_12819632_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12817915 - 12819632
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TATTTGTTGACA
Flanking Amino Acid:
PINTKNQAVKDRAESIVLKV
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
76.3
0.59
1
72.4
42.2
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
60
0.31
2.1
74.62
36.9

Associated Gene:

Gene:
ARPC5
Ensembl Gene ID:
ENSAPLG00000018503
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032040
12817148 - 12819992
2845