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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1286435_1287820_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1286435 - 1287820
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
CTATTTTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
CCTTGCTTAAAA
Flanking Amino Acid:
EELLADSEFRRYNKRKYQEI
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
81.3
0.7
0.9
80.5
36.9
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
58.9
0.28
1.9
68.09
44.4

Associated Gene:

Gene:
DNTTIP2
Ensembl Gene ID:
ENSAPLG00000023175
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045531
1285748 - 1294644
8897