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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1289151_1289537_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1289151 - 1289537
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TACTGCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTCTTGTACT
Flanking Amino Acid:
SLHQLKKQRRAEREKTTGDG
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
64.3
0.32
0.9
55.3
39.8
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
62.2
0.46
1.8
82.01
39.3

Associated Gene:

Gene:
DNTTIP2
Ensembl Gene ID:
ENSAPLG00000023175
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045531
1285748 - 1294644
8897