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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12894117_12894716_F

Intron Information:

Intron Rank:
143343
Intron Class:
major
Intron Phase:
Intron Coordinates:
12894117 - 12894716
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AAATTCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
62.6
0.26
1.5
61.26
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027218
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024975
12894056 - 12898344
4289