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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_12894879_12895117_F

Intron Information:

Intron Rank:
143344
Intron Class:
major
Intron Phase:
Intron Coordinates:
12894879 - 12895117
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATTCTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
0.9
82.4
29.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.5
0.75
0.7
82
29.2
Minor 5ss
38.1
-1.3
3
53
39
Minor BPS
64
0.52
1.7
84.04
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027218
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024975
12894056 - 12898344
4289