About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1290478_1292041_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1290478 - 1292041
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGAACGTTAACT
Flanking Amino Acid:
DDDLLKNKIDVLHLSSSIDP
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
88.1
0.86
0.7
85.6
28.2
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
60.3
0.4
2.1
78.8
42.7

Associated Gene:

Gene:
DNTTIP2
Ensembl Gene ID:
ENSAPLG00000023175
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045531
1285748 - 1294644
8897