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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1297276_1299015_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1297276 - 1299015
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CCCTTTTTAACT
Flanking Amino Acid:
IQLLTHNDPKELLCEASFRE
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.7
0.8
0.8
83.3
31.9
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
68.8
0.67
1.3
74.22
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029990
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039296
1296960 - 1304535
7576