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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1299131_1300264_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1299131 - 1300264
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTCCTTAAAA
Flanking Amino Acid:
LLEQLYVWAQVKPSSNQVNL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81
0.7
0.9
77.8
35.6
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
88
1.19
1.1
93.09
25.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029990
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039296
1296960 - 1304535
7576