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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1301096_1301832_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1301096 - 1301832
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGAAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCTTTGAAAA
Flanking Amino Acid:
PEERDELKVSAKLFIVGSNS
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
63.5
0.3
1
59.9
39.6
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
57.6
0.23
1.5
70.73
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029990
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039296
1296960 - 1304535
7576