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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13020059_13118287_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13020059 - 13118287
Intron Length:
98229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TATTTCTGAATG
Flanking Amino Acid:
QGFSTRYKIYREFGRWKVNN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.6
38.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.4
0.82
0.8
80.7
30.9
Minor 5ss
39.9
-1.1
2.8
52.3
44.5
Minor BPS
66.4
0.38
1.5
69.18
38.2

Associated Gene:

Gene:
BRINP3
Ensembl Gene ID:
ENSAPLG00000014479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037871
13005054 - 13200368
195315
ENSAPLT00000033303
13005054 - 13200368
195315
ENSAPLT00000015094
13019773 - 13200596
180824