About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13118479_13128131_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13118479 - 13128131
Intron Length:
9653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTTTCCATACTC
Flanking Amino Acid:
THFLLSATLGGEESLTIFVD
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.7
36.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
75.9
0.58
0.9
74.2
34.4
Minor 5ss
38.9
-1.2
3.6
54.8
49.4
Minor BPS
57.4
0.21
1.9
72.11
39.1

Associated Gene:

Gene:
BRINP3
Ensembl Gene ID:
ENSAPLG00000014479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033303
13005054 - 13200368
195315
ENSAPLT00000025610
13005054 - 13200368
195315
ENSAPLT00000015094
13019773 - 13200596
180824
ENSAPLT00000037871
13005054 - 13200368
195315