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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13128323_13148823_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13128323 - 13148823
Intron Length:
20501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTACCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTCCCTTACCA
Flanking Amino Acid:
HIQIASTAIKVTETRTGPLG
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
69.4
37.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69
0.43
0.9
67
33
Minor 5ss
27.5
-2.6
3.6
37.2
47.4
Minor BPS
70.6
0.64
1.6
79.53
36.3

Associated Gene:

Gene:
BRINP3
Ensembl Gene ID:
ENSAPLG00000014479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025610
13005054 - 13200368
195315
ENSAPLT00000015094
13019773 - 13200596
180824
ENSAPLT00000037871
13005054 - 13200368
195315
ENSAPLT00000033303
13005054 - 13200368
195315